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Research papers, University of Canterbury Library

Environmental stress and disturbance can affect the structure and functioning of marine ecosystems by altering their physical, chemical and biological features. In estuaries, benthic invertebrate communities play important roles in structuring sediments, influencing primary production and biogeochemical flux, and occupying key food web positions. Stress and disturbance can reduce species diversity, richness and abundance, with ecological theory predicting that biodiversity will be at its lowest soon after a disturbance with assemblages dominated by opportunistic species. The Avon-Heathcote Estuary in Christchurch New Zealand has provided a novel opportunity to examine the effects of stress, in the form of eutrophication, and disturbance, in the form of cataclysmic earthquake events, on the structure and functioning of an estuarine ecosystem. For more than 50 years, large quantities (up to 500,000m3/day) of treated wastewater were released into this estuary but in March 2010 this was diverted to an ocean outfall, thereby reducing the nutrient loading by around 90% to the estuary. This study was therefore initially focussed on the reversal of eutrophication and consequent effects on food web structure in the estuary as it responded to lower nutrients. In 2011, however, Christchurch was struck with a series of large earthquakes that greatly changed the estuary. Massive amounts of liquefied sediments, covering up to 65% of the estuary floor, were forced up from deep below the estuary, the estuary was tilted by up to a 50cm rise on one side and a corresponding drop on the other, and large quantities of raw sewage from broken wastewater infrastructure entered the estuary for up to nine months. This study was therefore a test of the potentially synergistic effects of nutrient reduction and earthquake disturbance on invertebrate communities, associated habitats and food web dynamics. Because there was considerable site-to-site heterogeneity in the estuary, the sites in this study were selected to represent a eutrophication gradient from relatively “clean” (where the influence of tidal flows was high) to highly impacted (near the historical discharge site). The study was structured around these sites, with components before the wastewater diversion, after the diversion but before the earthquakes, and after the earthquakes. The eutrophication gradient was reflected in the composition and isotopic chemistry of primary producer and invertebrate communities and the characteristics of sediments across the sample sites. Sites closest to the former wastewater discharge pipe were the most eutrophic and had cohesive organic -rich, fine sediments and relatively depauperate communities dominated by the opportunistic taxa Capitellidae. The less-impacted sites had coarser, sandier sediments with fewer pollutants and far less organic matter than at the eutrophic sites, relatively high diversity and lower abundances of micro- and macro-algae. Sewage-derived nitrogen had became incorporated into the estuarine food web at the eutrophic sites, starting at the base of the food chain with benthic microalgae (BMA), which were found to use mostly sediment-derived nitrogen. Stable isotopic analysis showed that δ13C and δ15N values of most food sources and consumers varied spatially, temporally and in relation to the diversion of wastewater, whereas the earthquakes did not appear to affect the overall estuarine food web structure. This was seen particularly at the most eutrophic site, where isotopic signatures became more similar to the cleaner sites over two-and-a-half years after the diversion. New sediments (liquefaction) produced by the earthquakes were found to be coarser, have lower concentrations of heavy metals and less organic matter than old (existing) sediments. They also had fewer macroinvertebrate inhabitants initially after the earthquakes but most areas recovered to pre-earthquake abundance and diversity within two years. Field experiments showed that there were higher amounts of primary production and lower amounts of nutrient efflux from new sediments at the eutrophic sites after the earthquakes. Primary production was highest in new sediments due to the increased photosynthetic efficiency of BMA resulting from the increased permeability of new sediments allowing increased light penetration, enhanced vertical migration of BMA and the enhanced transport of oxygen and nutrients. The reduced efflux of NH4-N in new sediments indicated that the capping of a large portion of eutrophic old sediments with new sediments had reduced the release of legacy nutrients (originating from the historical discharge) from the sediments to the overlying water. Laboratory experiments using an array of species and old and new sediments showed that invertebrates altered levels of primary production and nutrient flux but effects varied among species. The mud snail Amphibola crenata and mud crab Austrohelice crassa were found to reduce primary production and BMA biomass through the consumption of BMA (both species) and its burial from bioturbation and the construction of burrows (Austrohelice). In contrast, the cockle Austrovenus stutchburyi did not significantly affect primary production and BMA biomass. These results show that changes in the structure of invertebrate communities resulting from disturbances can also have consequences for the functioning of the system. The major conclusions of this study were that the wastewater diversion had a major effect on food web dynamics and that the large quantities of clean and unpolluted new sediments introduced to the estuary during the earthquakes altered the recovery trajectory of the estuary, accelerating it at least throughout the duration of this study. This was largely through the ‘capping’ effect of the new liquefied, coarser-grained sediments as they dissipated across the estuary and covered much of the old organic-rich eutrophic sediments. For all aspects of this study, the largest changes occurred at the most eutrophic sites; however, the surrounding habitats were important as they provided the context for recovery of the estuary, particularly because of the very strong influence of sediments, their biogeochemistry, microalgal and macroalgal dynamics. There have been few studies documenting system level responses to eutrophication amelioration and to the best on my knowledge there are no other published studies examining the impacts of large earthquakes on benthic communities in an estuarine ecosystem. This research gives valuable insight and advancements in the scientific understanding of the effects that eutrophication recovery and large-scale disturbances can have on the ecology of a soft-sediment ecosystem.

Research papers, University of Canterbury Library

This paper presents a seismic velocity model of Canterbury, New Zealand based on 3D geologic surfaces and velocities from a range of data sources. The model provides the 3D crustal structure in the region at multiple length scales for seismic wave propagation simulations, such as broadband ground motion and shallow site response analyses related to understanding the ground motions and site responses during the 2010- 2011 Canterbury earthquakes. Pre-Quaternary geologic horizons are calculated based on the reinterpretation of a comprehensive network of seismic reflection surveys from seven different campaigns over the past 50 years, as well as point constraints across an array of petroleum industry drill holes. Particular attention is given to a detailed representation of Quaternary stratigraphy, representing shallow (z<250m) near-surface layers in the model. Seismic velocities are obtained from seismic reflection processing (for Vp) and also recently performed active and passive surface wave analyses (for Vs). Over 1,700 water wells in the region are used to constrain the complex inter-bedded Quaternary stratigraphy (gravels, sands, silts, organics etc.) near the coastline, including beneath urban Christchurch, which has resulted from fluvial deposition and marine regression and transgression. For the near-surface Springston and Christchurch Formations in the Christchurch urban area (z<50m), high-spatial resolution seismic velocities (including Vs30 ) were obtained from over 13,000 cone penetration tests combined with a recently developed CPT-Vs correlation.

Research papers, University of Canterbury Library

The Avon-Heathcote Estuary is of significant value to Christchurch due to its high productivity, biotic diversity, proximity to the city, and its cultural, recreational and aesthetic qualities. Nonetheless, it has been subjected to decades of degradation from sewage wastewater discharges and encroaching urban development. The result was a eutrophied estuary, high in nitrogen, affected by large blooms of nuisance macroalgae and covered by degraded sediments. In March 2010, treated wastewater was diverted from the estuary to a site 3 km offshore. This quickly reduced water nitrogen by 90% within the estuary and, within months, there was reduced production of macroalgae. However, a series of earthquakes beginning in September 2010 brought massive changes: tilting of the estuary, changes in channels and water flow, and a huge influx of liquefied sediments that covered up to 65% of the estuary floor. Water nitrogen increased due to damage to sewage infrastructure and the diversion pipeline being turned off. Together, these drastically altered the estuarine ecosystem. My study involves three laboratory and five in situ experiments that investigate the base of the food chain and responses of benthic microalgae to earthquake-driven sediment and nutrient changes. It was predicted that the new sediments would be coarser and less contaminated with organic matter and nutrients than the old sediments, would have decreased microalgal biomass, and would prevent invertebrate grazing and bioturbation activities. It was believed that microalgal biomass would become similar across new and old sediments types as the unstable new sediments were resuspended and distributed over the old sediments. Contact cores of the sediment were taken at three sites, across a eutrophication gradient, monthly from September 2011 to March 2012. Extracted chlorophyll a pigments showed that microalgal biomass was generally lower on new liquefied sediments compared to old sediments, although there was considerable site to site variation, with the highly eutrophic sites being the most affected by the emergence of the new sediments. Grazer experiments showed that invertebrates had both positive and negative site-specific effects on microalgal biomass depending on their identity. At one site, new sediments facilitated grazing by Amphibola crenata, whereas at another site, new sediments did not alter the direct and indirect effects of invertebrates (Nicon aestuariensis, Macropthalmus hirtipes, and A. crenata) on microalgae. From nutrient addition experiments it was clear that benthic microalgae were able to use nutrients from within both old and new sediments equally. This implied that microalgae were reducing legacy nutrients in both sediments, and that they are an important buffer against eutrophication. Therefore, in tandem with the wastewater diversion, they could underpin much of the recovery of the estuary. Overall, the new sediments were less favourable for benthic microalgal growth and recolonisation, but were less contaminated than old sediments at highly eutrophic sites. Because the new sediments were less contaminated than the old sediments, they could help return the estuary to a noneutrophic state. However, if the new sediments, which are less favourable for microalgal growth, disperse over the old sediments at highly eutrophic sites, they could become contaminated and interfere with estuarine recovery. Therefore, recovery of microalgal communities and the estuary was expected to be generally long, but variable and site-specific, with the least eutrophic sites recovering quickly, and the most eutrophic sites taking years to return to a pre-earthquake and non-eutrophied state. changes in channels and water flow, and a huge influx of liquefied sediments that covered up to 65% of the estuary floor. Water nitrogen increased due to damage to sewage infrastructure and the diversion pipeline being turned off. Together, these drastically altered the estuarine ecosystem. My study involves three laboratory and five in situ experiments that investigate the base of the food chain and responses of benthic microalgae to earthquake-driven sedimen tand nutrient changes. It was predicted that the new sediments would be coarser and less contaminated with organic matter and nutrients than the old sediments, would have decreased microalgal biomass, and would prevent invertebrate grazing and bioturbation activities. It was believed that microalgal biomass would become similar across new and old sediments types as the unstable new sediments were resuspended and distributed over the old sediments. Contact cores of the sediment were taken at three sites, across a eutrophication gradient, monthly from September 2011 to March 2012. Extracted chlorophyll a pigments showed that microalgal biomass was generally lower on new liquefied sediments compared to old sediments, although there was considerable site to site variation, with the highly eutrophic sites being the most affected by the emergence of the new sediments. Grazer experiments showed that invertebrates had both positive and negative site-specific effects on microalgal biomass depending on their identity. At one site, new sediments facilitated grazing by Amphibola crenata, whereas at another site, new sediments did not alter the direct and indirect effects of invertebrates (Nicon aestuariensis, Macropthalmus hirtipes, and A. crenata) on microalgae. From nutrient addition experiments it was clear that benthic microalgae were able to use nutrients from within both old and new sediments equally. This implied that microalgae were reducing legacy nutrients in both sediments, and that they are

Research papers, University of Canterbury Library

The Porters Pass fault (PPF) is a prominent element of the Porters Pass-Amberley Fault Zone (PPAFZ) which forms a broad zone of active earth deformation ca 100 km long, 60-90 km west and north of Christchurch. For a distance of ca 40 km the PPF is defined by a series of discontinuous Holocene active traces between the Rakaia and Waimakariri Rivers. The amount of slip/event and the timing of paleoearthquakes are crucial components needed to estimate the earthquake potential of a fault. Movement was assumed to be, coseismic and was quantified by measuring displaced geomorphic features using either tape measure or surveying equipment. Clustering of offset data suggests that four to five earthquakes occurred on the PPF during the Holocene and these range between ca 5-7 m/event. Timing information was obtained from four trenches excavated across the fault and an auger adjacent to the fault. Organic samples from these sites were radiocarbon dated and used in conjunction with data from previous studies to identify the occurrence of at least four earthquakes at 8500 ± 200, 5300 ± 700, 2500 ± 200 and 1000 ± 100 years B.P. Evidence suggests that an additional event is also possible at 6200 ± 500 years B.P. The ~1000, 5300 and 6200 years B.P. paleoearthquakes were previously unrecognised, while the 500 year event previously inferred from rock-avalanche data has been discarded. The present data set produces recurrence intervals of ~2000-2500 years for the Holocene. The identification of only one Holocene PPF rupture to the west of Red Lakes indicates the presence of a segment boundary that prevents the propagation of rupture beyond this point. This is consistent with displacement data and results in slip rates of 0.5-0.7 mm/yr and 2.5-3.4 mm/yr to the west and east of Red Lakes respectively. It is possible that the nearby extensional Red Hill Fault influences PPF rupture propagation. The combination of geometric, slip rate and timing data has enabled the magnitude of prehistoric earthquakes on the PPF to be estimated. These magnitudes range from an average of between 6.9 for a fault rupture from Waimakariri River to Red Lakes, to a maximum of 7.4 that ruptures the entire length of the PPAFZ, including the full length of the PPF. These estimates are approximately consistent with previous magnitude estimates along the full length of the PPAFZ of between 7.0 and 7.5.

Research papers, University of Canterbury Library

As a consequence of the 2010 – 2011 Canterbury earthquake sequence, Christchurch experienced widespread liquefaction, vertical settlement and lateral spreading. These geological processes caused extensive damage to both housing and infrastructure, and increased the need for geotechnical investigation substantially. Cone Penetration Testing (CPT) has become the most common method for liquefaction assessment in Christchurch, and issues have been identified with the soil behaviour type, liquefaction potential and vertical settlement estimates, particularly in the north-western suburbs of Christchurch where soils consist mostly of silts, clayey silts and silty clays. The CPT soil behaviour type often appears to over-estimate the fines content within a soil, while the liquefaction potential and vertical settlement are often calculated higher than those measured after the Canterbury earthquake sequence. To investigate these issues, laboratory work was carried out on three adjacent CPT/borehole pairs from the Groynes Park subdivision in northern Christchurch. Boreholes were logged according to NZGS standards, separated into stratigraphic layers, and laboratory tests were conducted on representative samples. Comparison of these results with the CPT soil behaviour types provided valuable information, where 62% of soils on average were specified by the CPT at the Groynes Park subdivision as finer than what was actually present, 20% of soils on average were specified as coarser than what was actually present, and only 18% of soils on average were correctly classified by the CPT. Hence the CPT soil behaviour type is not accurately describing the stratigraphic profile at the Groynes Park subdivision, and it is understood that this is also the case in much of northwest Christchurch where similar soils are found. The computer software CLiq, by GeoLogismiki, uses assessment parameter constants which are able to be adjusted with each CPT file, in an attempt to make each more accurate. These parameter changes can in some cases substantially alter the results for liquefaction analysis. The sensitivity of the overall assessment method, raising and lowering the water table, lowering the soil behaviour type index, Ic, liquefaction cutoff value, the layer detection option, and the weighting factor option, were analysed by comparison with a set of ‘base settings’. The investigation confirmed that liquefaction analysis results can be very sensitive to the parameters selected, and demonstrated the dependency of the soil behaviour type on the soil behaviour type index, as the tested assessment parameters made very little to no changes to the soil behaviour type plots. The soil behaviour type index, Ic, developed by Robertson and Wride (1998) has been used to define a soil’s behaviour type, which is defined according to a set of numerical boundaries. In addition to this, the liquefaction cutoff point is defined as Ic > 2.6, whereby it is assumed that any soils with an Ic value above this will not liquefy due to clay-like tendencies (Robertson and Wride, 1998). The method has been identified in this thesis as being potentially unsuitable for some areas of Christchurch as it was developed for mostly sandy soils. An alternative methodology involving adjustment of the Robertson and Wride (1998) soil behaviour type boundaries is proposed as follows:  Ic < 1.31 – Gravelly sand to dense sand  1.31 < Ic < 1.90 – Sands: clean sand to silty sand  1.90 < Ic < 2.50 – Sand mixtures: silty sand to sandy silt  2.50 < Ic < 3.20 – Silt mixtures: clayey silt to silty clay  3.20 < Ic < 3.60 – Clays: silty clay to clay  Ic > 3.60 – Organics soils: peats. When the soil behaviour type boundary changes were applied to 15 test sites throughout Christchurch, 67% showed an improved change of soil behaviour type, while the remaining 33% remained unchanged, because they consisted almost entirely of sand. Within these boundary changes, the liquefaction cutoff point was moved from Ic > 2.6 to Ic > 2.5 and altered the liquefaction potential and vertical settlement to more realistic ii values. This confirmed that the overall soil behaviour type boundary changes appear to solve both the soil behaviour type issues and reduce the overestimation of liquefaction potential and vertical settlement. This thesis acts as a starting point towards researching the issues discussed. In particular, future work which would be useful includes investigation of the CLiq assessment parameter adjustments, and those which would be most suitable for use in clay-rich soils such as those in Christchurch. In particular consideration of how the water table can be better assessed when perched layers of water exist, with the limitation that only one elevation can be entered into CLiq. Additionally, a useful investigation would be a comparison of the known liquefaction and settlements from the Canterbury earthquake sequence with the liquefaction and settlement potentials calculated in CLiq for equivalent shaking conditions. This would enable the difference between the two to be accurately defined, and a suitable adjustment applied. Finally, inconsistencies between the Laser-Sizer and Hydrometer should be investigated, as the Laser-Sizer under-estimated the fines content by up to one third of the Hydrometer values.

Research papers, University of Canterbury Library

Following the 22nd February 2011, Mw 6.2 earthquake located along a previously unknown fault beneath the Port Hills of Christchurch, surface cracking was identified in contour parallel locations within fill material at Quarry Road on the lower slopes of Mount Pleasant. GNS Science, in the role of advisor to the Christchurch City Council, concluded that these cracks were a part of a potential rotational mass movement (named zone 11A) within the fill and airfall loess material present. However, a lack of field evidence for slope instability and an absence of laboratory geotechnical data on which slope stability analysis was based, suggested this conclusion is potentially incorrect. It was hypothesised that ground cracking was in fact due to earthquake shaking, and not mass movement within the slope, thus forming the basis of this study. Three soil units were identified during surface and subsurface investigations at Quarry Road: fill derived from quarry operations in the adjacent St. Andrews Quarry (between 1893 and 1913), a buried topsoil, and underlying in-situ airfall loess. The fill material was identified by the presence of organic-rich topsoil “clods” that were irregular in both size (∼10 – 200 mm) and shape, with variable thicknesses of 1 – 10 m. Maximum thickness, as indicated by drill holes and geophysical survey lines, was identified below 6 Quarry Road and 7 The Brae where it is thought to infill a pre-existing gully formed in the underlying airfall loess. Bearing strength of the fill consistently exceeded 300 kPa ultimate below ∼500 mm depth. The buried topsoil was 200 – 300 mm thick, and normally displayed a lower bearing strength when encountered, but not below 300 kPa ultimate (3 – 11 blows per 100mm or ≥100 kPa allowable). In-situ airfall loess stood vertically in outcrop due to its characteristic high dry strength and also showed Scala penetrometer values of 6 – 20+ blows per 100 mm (450 – ≥1000 kPa ultimate). All soils were described as being moist to dry during subsurface investigations, with no groundwater table identified during any investigation into volcanic bedrock. In-situ moisture contents were established using bulk disturbed samples from hand augers and test pitting. Average moisture contents were low at 9% within the fill, 11 % within the buried topsoil, and 8% within the airfall loess: all were below the associated average plastic limit of 17, 15, and 16, respectively, determined during Atterberg limit analysis. Particle size distributions, identified using the sieve and pipette method, were similar between the three soil units with 11 – 20 % clay, 62 – 78 % silt, and 11 – 20 % fine sand. Using these results and the NZGS soil classification, the loess derived fill and in-situ airfall loess are termed SILT with some clay and sand, and the buried topsoil is SILT with minor clay and sand. Dispersivity of the units was found using the Emerson crumb test, which established that the fill can be non- to completely dispersive (score 0 – 4). The buried topsoil was always non-dispersive (score 0), and airfall loess completely dispersive (score 4). Values for cohesion (c) and internal friction angle (φ) of the three soil units were established using the direct shear box at field moisture contents. Results showed all soil units had high shear strengths at the moisture contents tested (c = 18 – 24 kPa and φ = 42 – 50°), with samples behaving in a brittle fashion. Moisture content was artificially increased to 16% within the buried topsoil, which reduced the shear strength (c = 10 kPa, φ = 18°) and allowed it to behave plastically. Observational information indicating stability at Quarry Road included: shallow, discontinuous, cracks that do not display vertical offset; no scarp features or compressional zones typical of landsliding; no tilted or deformed structures; no movement in inclinometers; no basal shear zone identified in logged core to 20 m depth; low field moisture contents; no groundwater table; and high soil strength using Scala penetrometers. Limit equilibrium analysis of the slope was conducted using Rocscience software Slide 5.0 to verify the slope stability identified by observational methods. Friction, cohesion, and density values determined during laboratory were input into the two slope models investigated. Results gave minimum static factor of safety values for translational (along buried topsoil) and rotational (in the fill) slides of 2.4 – 4.2. Sensitivity of the slope to reduced shear strength parameters was analysed using c = 10 kPa and φ = 18° for the translational buried topsoil plane, and a cohesion of 0 kPa within the fill for the rotational plane. The only situation that gave a factor of safety <1.0 was in nonengineered fill at 0.5 m depth. Pseudostatic analysis based on previous peak ground acceleration (PGA) values for the Canterbury Earthquake Sequence, and predicted PGAs for future Alpine Fault and Hope Fault earthquakes established minimum factor of safety values between 1.2 and 3.3. Yield acceleration PGAs were computed to be between 0.8g and 1.6g. Based on all information gathered, the cracking at Quarry Road is considered to be shallow deformation in response to earthquake shaking, and not due to deep-seated landsliding. It is recommended that the currently bare site be managed by smoothing the land, installing contour drainage, and bioremediation of the surface soils to reduce surface water infiltration and runoff. Extensive earthworks, including removal of the fill, are considered unnecessary. Any future replacement of housing would be subject to site-specific investigations, and careful foundation design based on those results.